miRBase entry: gga-mir-6578

Stem-loop gga-mir-6578


Accession
MI0022396
Description
Gallus gallus gga-mir-6578 precursor miRNA


Sequence

5 reads, 0 reads per million, 1 experiments
ugucuugcuuuguagcuacCAGCUGUGGCAGAGUUCUCCAccagugagacuaugGGGCACUCUGCUGACCGCUUGGCugcugcuuuugcgaucucccgugug
....((((...(((((..(((((.((((((((((.(((((..(((...))).))))).)))))))).)).)).)))..)))))....))))...........

Structure
-------uguc    -uuu     ua   -  U  -        U     cc   g 
           uugc    guagc  cCA GC GU GGCAGAGU CUCCA  agu  
           ||||    |||||  ||| || || |||||||| |||||  ||| a
           agcg    cgucg  GGU CG CA UCGUCUCA GGGgu  uca  
gugugcccucu    uuuu     uC   U  C  G        C     -a   g 


Annotation confidence Not enough data
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Genome context
chr3: 105429051-105429152 [+]

Database links

Mature gga-miR-6578-5p

Accession MIMAT0025663
Description Gallus gallus gga-miR-6578-5p mature miRNA
Sequence 20 - CAGCUGUGGCAGAGUUCUCCA - 40
Evidence experimental
Illumina [1]

Mature gga-miR-6578-3p

Accession MIMAT0025664
Description Gallus gallus gga-miR-6578-3p mature miRNA
Sequence 55 - GGGCACUCUGCUGACCGCUUGGC - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227