Stem-loop gga-mir-6608-1

Accession

MI0022427

Description

Gallus gallus gga-mir-6608-1 precursor miRNA

Sequence

2823 reads, 2236 reads per million, 2 experiments

uggccUGAUGGGGAAUGAAGAUGAAcuguucuuccucaccagugccucaguguugaaaguugAGCACUGCAAGAGGGAGAGAGAUcauggucauucuuugucccaggaac
...(((((((((((((((..((((.((.(((((((((..((((((.((((.........))))))))))...))))))))))).))))..))))))))))))..)))...

Structure

ugg   --            AG    A  g         -ac      c    ugu 
   ccU  GAUGGGGAAUGA  AUGA cu uucuuccuc   cagugc ucag   u
   |||  ||||||||||||  |||| || |||||||||   |||||| ||||   g
   gga  cuguuucuuacu  uacU GA GAGAGGGAG   GUCACG Aguu   a
caa   cc            gg    A  -         AAC      -    gaa 

Annotation confidence Not enough data

Genome context

chr1: 65891957-65892066 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-6608-1

Mature gga-miR-6608-5p

• Accession: MIMAT0025702
• Description: Gallus gallus gga-miR-6608-5p mature miRNA
• Sequence: 6 - UGAUGGGGAAUGAAGAUGAA - 25
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6608-3p

• Accession: MIMAT0025703
• Description: Gallus gallus gga-miR-6608-3p mature miRNA
• Sequence: 63 - AGCACUGCAAGAGGGAGAGAGAU - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227