miRBase entry: gga-mir-6677

Stem-loop gga-mir-6677


Accession
MI0022497
Description
Gallus gallus gga-mir-6677 precursor miRNA


Sequence

423 reads, 1.0 reads per million, 99 experiments
agcuuaaugcaagcuccuuCUCACUGCCUGCCCUGAGCACACCaucaagcauuggUGCUCAGACACGUCAGGAGGAgguacugugcaaacgcccugcaaagggauucug
.......((((((..(((((((.((((.((..((((((..((((........)))))))))).)).).))))))))))..)).))))....((((....))))......

Structure
---------------agcuuaa    -  cu       A   - C  CC      AC    uca 
                      ugca ag  ccuuCUC CUG C UG  CUGAGC  ACCa   a
                      |||| ||  ||||||| ||| | ||  ||||||  ||||    
                      acgu uc  ggAGGAG GAC G AC  GACUCG  Uggu   g
gucuuagggaaacgucccgcaa    g  au       -   U C  -A      --    uac 


Annotation confidence High
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Genome context
20: 13418285-13418393 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-6677
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-6677-5p

Accession MIMAT0025780
Description Gallus gallus gga-miR-6677-5p mature miRNA
Sequence 20 - CUCACUGCCUGCCCUGAGCACACC - 43
Evidence experimental
Illumina [1]

Mature gga-miR-6677-3p

Accession MIMAT0025781
Description Gallus gallus gga-miR-6677-3p mature miRNA
Sequence 56 - UGCUCAGACACGUCAGGAGGA - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227