Stem-loop gga-mir-6700

Accession

MI0022522

Description

Gallus gallus gga-mir-6700 precursor miRNA

Sequence

114 reads, 86 reads per million, 1 experiments

agccuuauuaagagcagcugagggagCUGGGAUUGUUCAGGAGAGGAGGCucaggugugaccuuaUCACUCUCUAGAACUACUCAAAGGgaagcuguggugagguggag
.((((((((....((((((........((((...((((.((((((((((.(((....)))))))....)))))).))))..))))......))))))))))))))....

Structure

---a        aaga      gagggagC    AUU    A      ----    C   g 
    gccuuauu    gcagcu        UGGG   GUUC GGAGAG    GAGG uca g
    ||||||||    ||||||        ||||   |||| ||||||    |||| |||  
    uggagugg    ugucga        ACUC   CAAG UCUCUC    uucc agu u
gagg        ----      --agGGAA    -AU    A      ACUa    -   g 

Annotation confidence Not enough data

Genome context

chr1: 59412540-59412648 [-]

Mature gga-miR-6700-5p

• Accession: MIMAT0025809
• Description: Gallus gallus gga-miR-6700-5p mature miRNA
• Sequence: 27 - CUGGGAUUGUUCAGGAGAGGAGGC - 50
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6700-3p

• Accession: MIMAT0025810
• Description: Gallus gallus gga-miR-6700-3p mature miRNA
• Sequence: 66 - UCACUCUCUAGAACUACUCAAAGG - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227