Stem-loop gga-mir-6543

Accession

MI0022539

Description

Gallus gallus gga-mir-6543 precursor miRNA

Sequence

54 reads, 5 reads per million, 4 experiments

ccauucccuuuuguccuguuGCUGUUACCUGAGAGAAGAUGCUGacucccuccgaccacaGCCUCCUUUCAGGUCACUguaggcagcgcuaaggucuucccugagccu
.................((((((((.(((((((((..((.((((..((.....))...)))).))))))))))).))....))))))(((.(((.....))).)))..

Structure

----ccauucccuuuuguccu      ----  U         AA  U    -ac  c 
                     guuGCU    GU ACCUGAGAG  GA GCUG   uc c
                     ||||||    || |||||||||  || ||||   || u
                     cgacgg    CA UGGACUUUC  CU CGac   ag c
uccgagucccuucuggaaucg      augU  C         --  C    acc  c 

Annotation confidence Low

Genome context

chr1: 133686509-133686616 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-6543

Mature gga-miR-6543-5p

• Accession: MIMAT0025826
• Description: Gallus gallus gga-miR-6543-5p mature miRNA
• Sequence: 21 - GCUGUUACCUGAGAGAAGAUGCUG - 44
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6543-3p

• Accession: MIMAT0025827
• Description: Gallus gallus gga-miR-6543-3p mature miRNA
• Sequence: 61 - GCCUCCUUUCAGGUCACU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227