Stem-loop gga-mir-6562

Accession

MI0022542

Description

Gallus gallus gga-mir-6562 precursor miRNA

Sequence

349 reads, 120 reads per million, 1 experiments

ucuuuuguagcuccggaguucuuguAGGGGAAAGGAAUGUGCUGUGGugggaauuucagacgccUCAGUCAUUUCUUGCUCUCUGUcaggaucucgggugauccugaggg
.((((.....(.((.(((.(((((..(((((((((((((.((((.((((...........)))).))))))))))))..)))))..))))).))).)).).....)))).

Structure

u    uguag u  g   u     uA     --        U    U    ggaa 
 cuuu     c cc gag ucuug  GGGGA  AAGGAAUG GCUG GGug    u
 ||||     | || ||| |||||  |||||  |||||||| |||| ||||    u
 ggag     g gg cuc aggac  UCUCU  UUCUUUAC UGAC ccgc    u
g    uccua u  g   u     UG     CG        -    U    agac 

Annotation confidence Low

Genome context

chr2: 82060204-82060313 [-]

Mature gga-miR-6562-5p

• Accession: MIMAT0025832
• Description: Gallus gallus gga-miR-6562-5p mature miRNA
• Sequence: 26 - AGGGGAAAGGAAUGUGCUGUGG - 47
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6562-3p

• Accession: MIMAT0025833
• Description: Gallus gallus gga-miR-6562-3p mature miRNA
• Sequence: 65 - UCAGUCAUUUCUUGCUCUCUGU - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227