Stem-loop ghr-MIR167b

Accession

MI0022545

Description

Gossypium hirsutum ghr-MIR167b precursor miRNA

Literature search

23 open access papers mention ghr-MIR167b
(113 sentences)

Sequence

10707471 reads, 334852.0 reads per million, 51 experiments

gcgugaaccuacaagcaguUGAAGCUGCCAGCAUGAUCUAaacuuccuucucuguugagggauagaugGGAUCAUGUGGUAGCUUCACCuguuguugggaucacga
.(((((.((((..(((((.(((((((((((.((((((((...((((((((......)))))).))...))))))))))))))))))).)))))..)))).))))).

Structure

g     a    ca     u           G        Aaa  -      uc 
 cguga ccua  agcag UGAAGCUGCCA CAUGAUCU   cu uccuuc  u
 ||||| ||||  ||||| ||||||||||| ||||||||   || ||||||   
 gcacu gggu  uuguC ACUUCGAUGGU GUACUAGG   ga agggag  g
a     a    ug     C           -        gua  u      uu 

Annotation confidence High

Genome context

Unknown

Mature ghr-miR167b-5p

• Accession: MIMAT0025838
• Description: Gossypium hirsutum ghr-miR167b-5p mature miRNA
• Sequence: 20 - UGAAGCUGCCAGCAUGAUCUA - 40
• Evidence: experimental ; microarray [1]

Mature ghr-miR167b-3p

• Accession: MIMAT0055310
• Description: Gossypium hirsutum ghr-miR167b-3p mature miRNA
• Sequence: 69 - GGAUCAUGUGGUAGCUUCACC - 89
• Evidence: experimental ; unknown

References

1. PubMed ID: 22160515
   Difference in miRNA expression profiles between two cotton cultivars with distinct salt sensitivity
   "Yin Z, Li Y, Yu J, Liu Y, Li C, Han X, Shen F"
   "Mol Biol Rep (2012) 39:4961-4970