Stem-loop ghr-MIR169a

Accession

MI0022546

Description

Gossypium hirsutum ghr-MIR169a precursor miRNA

Literature search

12 open access papers mention ghr-MIR169a
(32 sentences)

Sequence

1941 reads, 82.0 reads per million, 47 experiments

agauaaagagucuuguuuggUAGCCAAGGAUGACUUGCCUGcaccuaauguccacgagguuuuaauacaucaaaaacccugguugggucccaGGCAGUCACCUUGGCUAACUagacaggcuguuuucau
.((.(((.(((((.(((((((((((((((.(((((.(((((.((((((...(((.(.((((((.........))))))))))))))))..)))))))))))))))))).)))))))))))).)))))..

Structure

-a  u   g     u       -        A     U     -c      ugu   c a      aau 
  ga aaa agucu guuuggU AGCCAAGG UGACU GCCUG  accuaa   cca g gguuuu   a
  || ||| ||||| ||||||| |||||||| ||||| |||||  ||||||   ||| | ||||||   c
  cu uuu ucgga cagaUCA UCGGUUCC ACUGA CGGac  uggguu   ggu c ccaaaa   a
ua  -   g     -       A        -     -     cc      ---   - -      acu 

Annotation confidence Medium

Genome context

Unknown

Mature ghr-miR169a-5p

• Accession: MIMAT0025839
• Description: Gossypium hirsutum ghr-miR169a-5p mature miRNA
• Sequence: 21 - UAGCCAAGGAUGACUUGCCUG - 41
• Evidence: experimental ; microarray [1]

Mature ghr-miR169a-3p

• Accession: MIMAT0055311
• Description: Gossypium hirsutum ghr-miR169a-3p mature miRNA
• Sequence: 93 - GGCAGUCACCUUGGCUAACU - 112
• Evidence: experimental ; unknown

References

1. PubMed ID: 22160515
   Difference in miRNA expression profiles between two cotton cultivars with distinct salt sensitivity
   "Yin Z, Li Y, Yu J, Liu Y, Li C, Han X, Shen F"
   "Mol Biol Rep (2012) 39:4961-4970