Stem-loop mmu-mir-6940

Accession

MI0022787

Symbol

MGI: Mir6940

Description

Mus musculus mmu-mir-6940 precursor miRNA

Sequence

32 reads, 8 reads per million, 20 experiments

agaggcAGGGCUGGCUGGAAGGUUUUUCGaggcuggcucagcaccccUUACCUUCCGUGCUUGCCCGCAG
....((.((((.(((((((((((.....(..((((...))))..)....)))))))).))).))))))..

Structure

agag  A    U   -        UUUUC ag    g 
    gc GGGC GGC UGGAAGGU     G  gcug  
    || |||| ||| ||||||||     |  |||| c
    CG CCCG UCG GCCUUCCA     c  cgac  
--GA  -    U   U        -UUcc ca    u 

Annotation confidence Not enough data

Genome context

chr12: 112733322-112733391 [+]

Mature mmu-miR-6940-5p

• Accession: MIMAT0027780
• Description: Mus musculus mmu-miR-6940-5p mature miRNA
• Sequence: 7 - AGGGCUGGCUGGAAGGUUUUUCG - 29
• Evidence: experimental ; meta-analysis [1]

Mature mmu-miR-6940-3p

• Accession: MIMAT0027781
• Description: Mus musculus mmu-miR-6940-3p mature miRNA
• Sequence: 48 - UUACCUUCCGUGCUUGCCCGCAG - 70
• Evidence: experimental ; meta-analysis [1]

References

1. PubMed ID: 22955976
   Discovery of hundreds of mirtrons in mouse and human small RNA data
   "Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC"
   "Genome Res (2012) 22:1634-1645