Stem-loop mdm-MIR156a

Accession

MI0022971

Description

Malus domestica mdm-MIR156a precursor miRNA

Literature search

17 open access papers mention mdm-MIR156a
(308 sentences)

Sequence

64858 reads, 16448.0 reads per million, 31 experiments

aguUGACAGAAGAGAGUGAGCACacacaggcggyaauuguauaaaaucauacyuuugggcggugcguGCUCACUUCUCUCUCCGUCAGCU
(((((((.(((((((((((((((.(((..((.......((((......))))......)).))).)))))))).))))).)).)))))))

Structure

       A  -     -        a   ag  ggyaauu    aa 
aguUGAC GA AGAGA GUGAGCAC cac  gc       guau  a
||||||| || ||||| |||||||| |||  ||       ||||   
UCGACUG CU UCUCU CACUCGug gug  cg       caua  a
       C  C     U        c   -g  -gguuuy    cu 

Annotation confidence High

Genome context

MDC010428.317: 6230-6319 [+]

Mature mdm-miR156a-5p

• Accession: MIMAT0025867
• Description: Malus domestica mdm-miR156a-5p mature miRNA
• Sequence: 4 - UGACAGAAGAGAGUGAGCAC - 23
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR156a-3p

• Accession: MIMAT0056568
• Description: Malus domestica mdm-miR156a-3p mature miRNA
• Sequence: 68 - GCUCACUUCUCUCUCCGUCAGCU - 90
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47