Stem-loop mdm-MIR156b

Accession

MI0022972

Description

Malus domestica mdm-MIR156b precursor miRNA

Literature search

14 open access papers mention mdm-MIR156b
(296 sentences)

Sequence

54767 reads, 14904.0 reads per million, 31 experiments

UGACAGAAGAGAGUGAGCACacaugguacuuucuugcaugcuggguucaugyucgaagcuuugcguGCUCACUCUCUAUCUGUCA
((((((((((((((((((((.((.(((...(((...((((.......))))...)))))).)).))))))))))))).)))))))

Structure

       -             a  u   acu   uug    cu 
UGACAGA AGAGAGUGAGCAC ca ggu   uuc   caug  g
||||||| ||||||||||||| || |||   |||   ||||  g
ACUGUCU UCUCUCACUCGug gu ucg   aag   guac  g
       A             c  u   ---   cuy    uu 

Annotation confidence High

Genome context

MDC015254.139: 2153-2237 [+]

Mature mdm-miR156b-5p

• Accession: MIMAT0025868
• Description: Malus domestica mdm-miR156b-5p mature miRNA
• Sequence: 1 - UGACAGAAGAGAGUGAGCAC - 20
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR156b-3p

• Accession: MIMAT0056569
• Description: Malus domestica mdm-miR156b-3p mature miRNA
• Sequence: 67 - GCUCACUCUCUAUCUGUCA - 85
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47