Stem-loop mdm-MIR156f

Accession

MI0022976

Description

Malus domestica mdm-MIR156f precursor miRNA

Literature search

15 open access papers mention mdm-MIR156f
(295 sentences)

Sequence

69771 reads, 16105.0 reads per million, 32 experiments

uggcgauuggguaguuauauuauuguggugaguguuaauuugguugggacuuaggguagaaauUGACAGAAGAGAGUGAGCACacagaggcacuugccauaaagcguaugccauugcuuuugcguGCUCAUGUCUCUUUCUGUCAGCUuccccauuuccacugccggauuaauauuaaguuguucauuuuuaauuuccuucucaucccca
(((.(((.(((.((....((((....((((((((((((((((((.((((..(.(((..(((.(((((((((((((((((((((.((((((((..((.((((.....)))).)).)))))))).)))))))).)))).))))))))).)))))))..))).).)))))))))))))........)))))..))))...)).)))))).)))

Structure

   c   u   u  uuau    uugu     --------             u -   cu a   ua   a         -    -        a        cu  c    a 
ugg gau ggg ag    auua    gguga        guguuaauuuggu g gga  u ggg  gaa uUGACAGAA GAGA GUGAGCAC cagaggca  ug caua a
||| ||| ||| ||    ||||    |||||        ||||||||||||| | |||  | |||  ||| ||||||||| |||| |||||||| ||||||||  || |||| g
acc cua cuc uc    uaau    uuacu        uauaauuaggccg c ccu  a ccc  cuU GACUGUCUU CUCU UACUCGug guuuucgu  ac guau c
   c   -   u  -cuu    --uu     uguugaau             u a   uu -   --   C         U    G        c        -u  c    g 

Annotation confidence High

Genome context

MDC018927.245: 11144-11353 [+]

Mature mdm-miR156f-5p

• Accession: MIMAT0025872
• Description: Malus domestica mdm-miR156f-5p mature miRNA
• Sequence: 64 - UGACAGAAGAGAGUGAGCAC - 83
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR156f-3p

• Accession: MIMAT0056573
• Description: Malus domestica mdm-miR156f-3p mature miRNA
• Sequence: 126 - GCUCAUGUCUCUUUCUGUCAGCU - 148
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47