Stem-loop mdm-MIR156k

Accession

MI0022981

Description

Malus domestica mdm-MIR156k precursor miRNA

Literature search

14 open access papers mention mdm-MIR156k
(294 sentences)

Sequence

69534 reads, 16093.0 reads per million, 32 experiments

guguuaauuugguugggacuuaggguagaaauUGACAGAAGAGAGUGAGCACayagaggcacuuugccauaaagcguaugccauugcuuuugcguGCUCAUGUCUCUUUCUGUCAGCUuccccauuuccacygccggauuaauau
(((((((((((((.((((..(.(((..(((.(((((((((((((((((((((..(((((((...((.((((.....)))).)).)))))))..)))))))).)))).))))))))).)))))))..))).).)))))))))))))

Structure

             u -   cu a   ua   a         -    -        ay       cuu  c    a 
guguuaauuuggu g gga  u ggg  gaa uUGACAGAA GAGA GUGAGCAC  agaggca   ug caua a
||||||||||||| | |||  | |||  ||| ||||||||| |||| ||||||||  |||||||   || |||| g
uauaauuaggccg c ccu  a ccc  cuU GACUGUCUU CUCU UACUCGug  uuuucgu   ac guau c
             y a   uu -   --   C         U    G        cg       --u  c    g 

Annotation confidence High

Genome context

MDC022169.138: 7386-7530 [+]

Mature mdm-miR156k-5p

• Accession: MIMAT0025877
• Description: Malus domestica mdm-miR156k-5p mature miRNA
• Sequence: 33 - UGACAGAAGAGAGUGAGCAC - 52
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR156k-3p

• Accession: MIMAT0056576
• Description: Malus domestica mdm-miR156k-3p mature miRNA
• Sequence: 96 - GCUCAUGUCUCUUUCUGUCAGCU - 118
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47