Stem-loop mdm-MIR156k

Accession

MI0022981

Description

Malus domestica mdm-MIR156k precursor miRNA

Literature search

14 open access papers mention mdm-MIR156k
(300 sentences)

Sequence

guguuaauuugguugggacuuaggguagaaauUGACAGAAGAGAGUGAGCACayagaggcacuuugccauaaagcguaugccauugcuuuugcgugcucaugucucuuucugucagcuuccccauuuccacygccggauuaauau
(((((((((((((.((((..(.(((..(((.(((((((((((((((((((((..(((((((...((.((((.....)))).)).)))))))..)))))))).)))).))))))))).)))))))..))).).)))))))))))))

Structure

             u -   cu a   ua   a         -    -        ay       cuu  c    a 
guguuaauuuggu g gga  u ggg  gaa uUGACAGAA GAGA GUGAGCAC  agaggca   ug caua a
||||||||||||| | |||  | |||  ||| ||||||||| |||| ||||||||  |||||||   || |||| g
uauaauuaggccg c ccu  a ccc  cuu gacugucuu cucu uacucgug  uuuucgu   ac guau c
             y a   uu -   --   c         u    g        cg       --u  c    g 

Annotation confidence Not enough data

Genome context

MDC022169.138: 7386-7530 [+]

Mature mdm-miR156k

• Accession: MIMAT0025877
• Description: Malus domestica mdm-miR156k mature miRNA
• Sequence: 33 - UGACAGAAGAGAGUGAGCAC - 52
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47