Accession
MI0022982
Description
Malus domestica
mdm-MIR156l precursor miRNA
Literature search
14 open access papers mention mdm-MIR156l
(294 sentences)
(294 sentences)
Sequence
56008
reads,
14553.0
reads per million, 32 experiments
gagauagagagagagacagaggcagagagagagaaggugaauggaugagggagaguaguagaucacuggacuaguagcgagugguggUGACAGAAGAGAGUGAGCACacucgggcaauuguauaaagccauaccuuugcgugauguguGCUCACUUCUCUUUCUGUCAGCcgcacgcccyccgcccyccgcccaccgcccaccgccugcgcugcccucccuuucauuaugucuuucuguguuccuccucucgaucuc
(((((.(((((.(((...((.(((((((((.(...(((((......(((((((.(((((..((((((.(........).))))))(((((((((((((((((((((((((((.((((..((((......))))..)))).))).)))))))))).)))).)))))))).))(((.((.....((............)).....)).)))))))).)))))))))))).).))))))))).)).)))))))).)))))
(((((.(((((.(((...((.(((((((((.(...(((((......(((((((.(((((..((((((.(........).))))))(((((((((((((((((((((((((((.((((..((((......))))..)))).))).)))))))))).)))).)))))))).))(((.((.....((............)).....)).)))))))).)))))))))))).).))))))))).)).)))))))).)))))
Structure
a a aca g g gaa auggau a ------------agaucacuggacuaguagcgaguggu - - - - g uu aa
gagau gagag gag ga gcagagaga a gguga gagggag guagu gg UGACAGAA GAGA GUGAGCACac ucg gcaa guau a
||||| ||||| ||| || ||||||||| | ||||| ||||||| ||||| || |||||||| |||| |||||||||| ||| |||| ||||
cucua cucuc cuc uu ugucuuucu u uuacu uucccuc cgucg cC ACUGUCUU CUCU CACUCGugug agu cguu caua g
g - --c g g --a ------ c cguccgccacccgccacccgccycccgccycccgcacg G U U u g uc cc
Annotation confidence
High
Do you think this miRNA is real?
Genome context
Unknown
Database links
Mature mdm-miR156l-5p
| Accession | MIMAT0025878 |
| Description | Malus domestica mdm-miR156l-5p mature miRNA |
| Sequence | 88 - UGACAGAAGAGAGUGAGCAC - 107 |
| Evidence |
experimental
miRNAseq [1] |
Mature mdm-miR156l-3p
| Accession | MIMAT0056577 |
| Description | Malus domestica mdm-miR156l-3p mature miRNA |
| Sequence | 149 - GCUCACUUCUCUUUCUGUCAGC - 170 |
| Evidence |
experimental
unknown |
References
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