Stem-loop mdm-MIR156m

Accession

MI0022983

Description

Malus domestica mdm-MIR156m precursor miRNA

Literature search

14 open access papers mention mdm-MIR156m
(294 sentences)

Sequence

56340 reads, 14497.0 reads per million, 32 experiments

aggguaaaggacggUGACAGAAGAGAGUGAGCACacaugguauuuucuugcaugcuggguucaugcuugaagcuuuguguGCUUACUCUCUAUCUGUCcacccaccucucucu
((((...(((..(((((((((((((((((((((((((.(((...(((..(((((.......)))))..)))))).)))))))))))))))).))))).))))..)))..))))

Structure

    uaa   ac    -     -                u   auu   uu     cu 
aggg   agg  ggUG ACAGA AGAGAGUGAGCACaca ggu   uuc  gcaug  g
||||   |||  |||| ||||| |||||||||||||||| |||   |||  |||||  g
ucuc   ucc  ccac UGUCU UCUCUCAUUCGugugu ucg   aag  cguac  g
    -uc   ac    C     A                u   ---   uu     uu 

Annotation confidence Medium

Genome context

MDC013580.195: 17840-17952 [-]

Mature mdm-miR156m-5p

• Accession: MIMAT0025879
• Description: Malus domestica mdm-miR156m-5p mature miRNA
• Sequence: 15 - UGACAGAAGAGAGUGAGCAC - 34
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR156m-3p

• Accession: MIMAT0056578
• Description: Malus domestica mdm-miR156m-3p mature miRNA
• Sequence: 81 - GCUUACUCUCUAUCUGUC - 98
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47