Stem-loop mdm-MIR156r

Accession

MI0022988

Description

Malus domestica mdm-MIR156r precursor miRNA

Literature search

14 open access papers mention mdm-MIR156r
(294 sentences)

Sequence

304875 reads, 11061.0 reads per million, 31 experiments

ugaauuugCUGACAGAAGAUAGAGAGCACagaugaggaaaugcaaaaacaaggcagcaucuccauccuuuguGCUCUCUAUUCUUCUGUCAACaccuuca
((((..((.(((((((((((((((((((((((.(((((.((((............)))).))).)).))))))))))))).)))))))))).))..))))

Structure

    uu  C          -             u  -   a    aaaaa 
ugaa  ug UGACAGAAGA UAGAGAGCACaga ga gga augc     c
||||  || |||||||||| ||||||||||||| || ||| ||||      
acuu  aC ACUGUCUUCU AUCUCUCGuguuu cu ccu uacg     a
    cc  A          U             c  a   c    acgga 

Annotation confidence High

Genome context

MDC012217.482: 9920-10019 [+]

Mature mdm-miR156r-5p

• Accession: MIMAT0025884
• Description: Malus domestica mdm-miR156r-5p mature miRNA
• Sequence: 9 - CUGACAGAAGAUAGAGAGCAC - 29
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR156r-3p

• Accession: MIMAT0056583
• Description: Malus domestica mdm-miR156r-3p mature miRNA
• Sequence: 73 - GCUCUCUAUUCUUCUGUCAAC - 93
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47