Stem-loop mdm-MIR160e

Accession

MI0023008

Description

Malus domestica mdm-MIR160e precursor miRNA

Literature search

8 open access papers mention mdm-MIR160e
(38 sentences)

Sequence

13635 reads, 1120.0 reads per million, 32 experiments

uaugUGCCUGGCUCCCUGUAUGCCAuuugcagaguuccaccgaacaucgauggccuccguggaugGCGUAUGAGGAGCCAUGCAUAUA
(((((((.(((((((.((((((((((((((.(((..(((.(((...))).))).))).)))))))))))))).))))))).)))))))

Structure

       C       C              a   uu   c   a 
uaugUGC UGGCUCC UGUAUGCCAuuugc gag  cca cga  
||||||| ||||||| |||||||||||||| |||  ||| ||| c
AUAUACG ACCGAGG GUAUGCGguaggug cuc  ggu gcu  
       U       A              c   -c   a   a 

Annotation confidence High

Genome context

MDC015910.528: 6786-6873 [-]

Mature mdm-miR160e-5p

• Accession: MIMAT0025904
• Description: Malus domestica mdm-miR160e-5p mature miRNA
• Sequence: 5 - UGCCUGGCUCCCUGUAUGCCA - 25
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR160e-3p

• Accession: MIMAT0056600
• Description: Malus domestica mdm-miR160e-3p mature miRNA
• Sequence: 66 - GCGUAUGAGGAGCCAUGCAUAUA - 88
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47