Stem-loop mdm-MIR162a

Accession

MI0023009

Description

Malus domestica mdm-MIR162a precursor miRNA

Literature search

6 open access papers mention mdm-MIR162a
(19 sentences)

Sequence

54784 reads, 3085.0 reads per million, 32 experiments

gcacuGGAGGCAGCGGUUCAUCGAUCUGuuuaugagauuuguugugaaaaaacacagaacaugaaucggUCGAUAAACCUCUGCAUCCAGcgc
((.(((((.((((.((((.(((((((.(((((((...(((((.((......))))))).))))))).))))))).)))).)))).))))).))

Structure

  a     G    C    C       U       aga     u  ga 
gc cuGGA GCAG GGUU AUCGAUC Guuuaug   uuugu gu  a
|| ||||| |||| |||| ||||||| |||||||   ||||| ||   
cg GACCU CGUC CCAA UAGCUgg uaaguac   agaca ca  a
  c     A    U    A       c       --a     -  aa 

Annotation confidence High

Genome context

MDC013824.133: 9436-9528 [-]

Mature mdm-miR162a-5p

• Accession: MIMAT0056601
• Description: Malus domestica mdm-miR162a-5p mature miRNA
• Sequence: 6 - GGAGGCAGCGGUUCAUCGAUCUG - 28
• Evidence: experimental ; unknown

Mature mdm-miR162a-3p

• Accession: MIMAT0025905
• Description: Malus domestica mdm-miR162a-3p mature miRNA
• Sequence: 70 - UCGAUAAACCUCUGCAUCCAG - 90
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47