Stem-loop mdm-MIR164f

Accession

MI0023016

Description

Malus domestica mdm-MIR164f precursor miRNA

Literature search

8 open access papers mention mdm-MIR164f
(39 sentences)

Sequence

62912 reads, 3374.0 reads per million, 32 experiments

gaUGGAGAAGCAGGGCACGUGCAuuucuaacucauucgaucgcguauacugagauauauauguauauguauguaugcuuuuuauuuagcagcugggaauuuauuacaaguuuauaugugugucucauauccagugaugaguuaguuguuCAUGUGCCCCUCUUCCCCAUC
(((((.((((..(((((((((.((..((((((((.....((((......(((((((((((((((..((((....((((........)))).............))))....)))))))))))))))......))))))))))))..)).)))))))))..)))).)))))

Structure

     A    CA         C  uu        uucga    guauac               --ua    ---------ugua    uuu 
gaUGG GAAG  GGGCACGUG Au  cuaacuca     ucgc      ugagauauauaugua    ugua             ugcu   u
||||| ||||  ||||||||| ||  ||||||||     ||||      |||||||||||||||    ||||             ||||    
CUACC CUUC  CCCGUGUAC ug  gauugagu     agug      acucuguguguauau    acau             acga   a
     C    UC         u  uu        -----    accuau               uuga    uauuuaagggucg    uuu 

Annotation confidence High

Genome context

MDC031214.7: 16039-16208 [+]

Mature mdm-miR164f-5p

• Accession: MIMAT0025912
• Description: Malus domestica mdm-miR164f-5p mature miRNA
• Sequence: 3 - UGGAGAAGCAGGGCACGUGCA - 23
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR164f-3p

• Accession: MIMAT0056607
• Description: Malus domestica mdm-miR164f-3p mature miRNA
• Sequence: 150 - CAUGUGCCCCUCUUCCCCAUC - 170
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47