Stem-loop mdm-MIR166b

Accession

MI0023018

Description

Malus domestica mdm-MIR166b precursor miRNA

Literature search

7 open access papers mention mdm-MIR166b
(35 sentences)

Sequence

5737046 reads, 331738.0 reads per million, 31 experiments

guuguggGGAAUGCUGUCUGGUUCGAGAccauuccucugaaacaaagaacaugaacaurgaaugaucUCGGACCAGGCUUCAUUCCCCccaac
((((.((((((((..(((((((((((((.(((((.(((.......)))...........))))).)))))))))))))..)))))))).))))

Structure

    u        CU             c     ----------c   ga 
guug ggGGAAUG  GUCUGGUUCGAGA cauuc           ucu  a
|||| ||||||||  ||||||||||||| |||||           |||  a
caac CCCCUUAC  CGGACCAGGCUcu guaag           aga  c
    c        UU             a     ruacaaguaca   aa 

Annotation confidence High

Genome context

Unknown

Mature mdm-miR166b-5p

• Accession: MIMAT0056609
• Description: Malus domestica mdm-miR166b-5p mature miRNA
• Sequence: 8 - GGAAUGCUGUCUGGUUCGAGA - 28
• Evidence: experimental ; unknown

Mature mdm-miR166b-3p

• Accession: MIMAT0025914
• Description: Malus domestica mdm-miR166b-3p mature miRNA
• Sequence: 68 - UCGGACCAGGCUUCAUUCCCC - 88
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47