Stem-loop mdm-MIR166e

Accession

MI0023021

Description

Malus domestica mdm-MIR166e precursor miRNA

Literature search

7 open access papers mention mdm-MIR166e
(35 sentences)

Sequence

11913659 reads, 691079.0 reads per million, 32 experiments

aguugagggAAAUGUUGUCUGGUUCGAGAUcuuucagugaagcuuggauauugucaucaucugaaugauuUCGGACCAGGCUUCAUUCCCCucaacu
(((((((((.((((..(((((((((((((((.((((((((.((.........))..))).))))).)))))))))))))))..)))).)))))))))

Structure

         A    UU               u     -   -a  uug 
aguugaggg AAUG  GUCUGGUUCGAGAUc uucag uga  gc   g
||||||||| ||||  ||||||||||||||| ||||| |||  ||   a
ucaacuCCC UUAC  CGGACCAGGCUuuag aaguc acu  ug   u
         C    UU               u     u   ac  uua 

Annotation confidence High

Genome context

MDC019868.259: 3882-3978 [-]

Mature mdm-miR166e-5p

• Accession: MIMAT0056612
• Description: Malus domestica mdm-miR166e-5p mature miRNA
• Sequence: 10 - AAAUGUUGUCUGGUUCGAGAU - 30
• Evidence: experimental ; unknown

Mature mdm-miR166e-3p

• Accession: MIMAT0025917
• Description: Malus domestica mdm-miR166e-3p mature miRNA
• Sequence: 71 - UCGGACCAGGCUUCAUUCCCC - 91
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47