Stem-loop mdm-MIR166g

Accession

MI0023023

Description

Malus domestica mdm-MIR166g precursor miRNA

Literature search

7 open access papers mention mdm-MIR166g
(36 sentences)

Sequence

5820301 reads, 324734.0 reads per million, 32 experiments

uugaggGGAAUGUUGUCUGGCUCGAGGacacuuuccuugaucuauaaucucuagaucaaccguuauauaccuauacauauaucuauauauguguuuguauauguuguguguaucaucugcauacauagaugaucagguuaaguagugucgUCGGACCAGGCUUCAUUCCCCccaa
.((.((((((((..((((((.((((.((((((...((((((((...(((((((..........(((((((..(((((((((....)))))))))..))))))).((((((((.....)))))))))))).))).)))))))).)))))).)))).))))))..)))))))).)).

Structure

u  a        UU      C    G      uuc        aua   -    ------------gaucaaccgu       cu         u 
 ug ggGGAAUG  GUCUGG UCGA Gacacu   cuugaucu   auc ucua                      uauauac  auacauaua c
 || ||||||||  |||||| |||| ||||||   ||||||||   ||| ||||                      |||||||  |||||||||  
 ac CCCCUUAC  CGGACC GGCU cuguga   gaauugga   uag agau                      guauaug  uguguauau u
a  c        UU      A    g      --u        --c   u    acauacgucuacuauguguguu       uu         a 

Annotation confidence High

Genome context

MDC020946.295: 36550-36724 [+]

Mature mdm-miR166g-5p

• Accession: MIMAT0056614
• Description: Malus domestica mdm-miR166g-5p mature miRNA
• Sequence: 7 - GGAAUGUUGUCUGGCUCGAGG - 27
• Evidence: experimental ; unknown

Mature mdm-miR166g-3p

• Accession: MIMAT0025919
• Description: Malus domestica mdm-miR166g-3p mature miRNA
• Sequence: 151 - UCGGACCAGGCUUCAUUCCCC - 171
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47