Stem-loop mdm-MIR167c

Accession

MI0023028

Description

Malus domestica mdm-MIR167c precursor miRNA

Literature search

11 open access papers mention mdm-MIR167c
(184 sentences)

Sequence

146039 reads, 10678.0 reads per million, 31 experiments

uagcaguUGAAGCUGCCAGCAUGAUCUAaacuucccucuuggucaaggaaagaucAGAUCAUGUGGUAGCUUCACCUGuug
((((((.(((((((((((.((((((((...(((.(((........))).)))...))))))))))))))))))).))))))

Structure

      u           G        Aaa   c   cuu 
uagcag UGAAGCUGCCA CAUGAUCU   cuu ccu   g
|||||| ||||||||||| ||||||||   ||| |||    
guuGUC ACUUCGAUGGU GUACUAGA   gaa gga   g
      C           -        cua   a   acu 

Annotation confidence High

Genome context

MDC000702.551: 40612-40692 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdm-MIR167c

Mature mdm-miR167c-5p

• Accession: MIMAT0025924
• Description: Malus domestica mdm-miR167c-5p mature miRNA
• Sequence: 8 - UGAAGCUGCCAGCAUGAUCUA - 28
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR167c-3p

• Accession: MIMAT0056619
• Description: Malus domestica mdm-miR167c-3p mature miRNA
• Sequence: 56 - AGAUCAUGUGGUAGCUUCACCUG - 78
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47