Stem-loop mdm-MIR167f

Accession

MI0023031

Description

Malus domestica mdm-MIR167f precursor miRNA

Literature search

11 open access papers mention mdm-MIR167f
(189 sentences)

Sequence

ucucugaagccuccaagaugaaagaagaacagaaagaaggagaagaagaaugaccuagcuacuugcuaucuuaucgugcaccuccaauaguUGAAGCUGCCAGCAUGAUCUAagcuuucuuuguacauaggacaggcuagaucauguggucgcuucaccuguugaaugaagcacgagaaaacccuagauucacagccaucgaccuccucaagaacccauuaggguuuuuuuuuuuuuuuucggaga
..........((((..((.(((((((((.........(((((..((.(..((...((((.....)))).....((((((.....((((((.((((((.((((.(((((((((.((((((((.......)))).))))))))))))))))).)))))).))))))......))))))................))..).))...))))).((((((((....))))))))))))))))).)))))).

Structure

ucucugaagc    aa  u         ------------acagaaaga     -aa  a aa  accuagcuacuugcuaucuua      -accuc      u      U    G         a    -    ug 
          cucc  ga gaaagaaga                     aggag   ga g  ug                     ucgugc      caauag UGAAGC GCCA CAUGAUCUA gcuu ucuu  u
          ||||  || |||||||||                     |||||   || |  ||                     ||||||      |||||| |||||| |||| ||||||||| |||| ||||  a
          gagg  cu uuuuuuuuu                     uccuc   cu c  ac                     agcacg      guuguc acuucg uggu guacuagau cgga agga  c
---------a    --  u         uuuuugggauuacccaagaac     cag  a cg  -----acuuagaucccaaaag      aaguaa      c      c    -         -    c    ua 

Annotation confidence Not enough data

Genome context

MDC006026.285: 8688-8933 [-]

Mature mdm-miR167f

• Accession: MIMAT0025927
• Description: Malus domestica mdm-miR167f mature miRNA
• Sequence: 92 - UGAAGCUGCCAGCAUGAUCUA - 112
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47