Stem-loop mdm-MIR167j

Accession

MI0023035

Description

Malus domestica mdm-MIR167j precursor miRNA

Literature search

11 open access papers mention mdm-MIR167j
(177 sentences)

Sequence

69821 reads, 4865.0 reads per million, 30 experiments

agugugcauauguucuuaucaugcacugguagcaguUGAAGCUGCCAGCAUGAUCUUAuaacucccuacuucguuuagggaagcucAGAUCAUCUGGCAGUUUCACCUGuuguugguagcaugagaccaucaaaacccu
((.((....(((.((...(((((((((((((((((.((((((((((((.(((((((......((((((.......)))))).....))))))))))))))))))).))))))))))).)))))))).)))....)).))

Structure

  u  gcau   u  uua      -           u            C       UAuaac      cu 
ag gu    aug uc   ucaugc acugguagcag UGAAGCUGCCAG AUGAUCU      ucccua  u
|| ||    ||| ||   |||||| ||||||||||| |||||||||||| |||||||      ||||||  c
uc ca    uac ag   aguacg ugguuguuGUC ACUUUGACGGUC UACUAGA      agggau  g
  c  aaac   c  ---      a           C            -       -cucga      uu 

Annotation confidence High

Genome context

MDC017525.223: 4367-4505 [+]

Mature mdm-miR167j-5p

• Accession: MIMAT0025931
• Description: Malus domestica mdm-miR167j-5p mature miRNA
• Sequence: 37 - UGAAGCUGCCAGCAUGAUCUUA - 58
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR167j-3p

• Accession: MIMAT0056626
• Description: Malus domestica mdm-miR167j-3p mature miRNA
• Sequence: 87 - AGAUCAUCUGGCAGUUUCACCUG - 109
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47