Stem-loop mdm-MIR169c

Accession

MI0023040

Description

Malus domestica mdm-MIR169c precursor miRNA

Literature search

5 open access papers mention mdm-MIR169c
(10 sentences)

Sequence

765 reads, 166.0 reads per million, 31 experiments

gcaggaagcuggaggccuuacaugaagaaaagagcguuguuuggUAGCCAAGGAUGACUUGCCCGccuccgauuucaugaaagaauauauggcauuauuuaauugucugucuaaaauuuauauucauguuuggaauccaGGCAGUCUCCUUGGCUAAUCUcacaggcucuuuucuuucaugcuaggcccuccucuucuuc
..((((((..((((((((..(((((((((((((((.((((..((((((((((((.((((.(((....(((((...((((((.((((....((((.((......))..))))....))))...)))))).))))).....)))))))))))))))).)))..))))))))))))).))))))..))).))))).)))))).

Structure

gc      cu     -   ua      -         g    uu   -         U    U   -CGcc     uuu      --a    auau    -u  uu 
  aggaag  ggagg ccu  caugaa gaaaagagc uugu  ggU AGCCAAGGA GACU GCC     uccga   caugaa   gaau    ggca  ua  u
  ||||||  ||||| |||  |||||| ||||||||| ||||  ||| ||||||||| |||| |||     |||||   ||||||   ||||    ||||  ||   
  uucuuc  ccucc gga  guacuu cuuuucucg gaca  CUA UCGGUUCCU CUGA CGG     agguu   guacuu   uuua    cugu  gu  a
-c      -u     c   uc      u         -    cU   A         -    -   accua     --u      aua    aaau    cu  ua 

Annotation confidence Medium

Genome context

MDC001494.456: 32568-32767 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdm-MIR169c

Mature mdm-miR169c-5p

• Accession: MIMAT0025936
• Description: Malus domestica mdm-miR169c-5p mature miRNA
• Sequence: 45 - UAGCCAAGGAUGACUUGCCCG - 65
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR169c-3p

• Accession: MIMAT0056630
• Description: Malus domestica mdm-miR169c-3p mature miRNA
• Sequence: 140 - GGCAGUCUCCUUGGCUAAUCU - 160
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47