Stem-loop mdm-MIR169d

Accession

MI0023041

Description

Malus domestica mdm-MIR169d precursor miRNA

Literature search

4 open access papers mention mdm-MIR169d
(9 sentences)

Sequence

766 reads, 167.0 reads per million, 31 experiments

gcaggaagcuggaggccuuacaugaagaaaagagcguuguuuggUAGCCAAGGAUGACUUGCCCGccuccgauuucaugaaagaauauauggcauuauuuaauugucugucuaaaauuuauauucauguuuggaauccaGGCAGUCUCCUUGGCUAAUCUcacaggcucuuuucuuucaugcuaggcccuccucuucuuc
..((((((..((((((((..(((((((((((((((.((((..((((((((((((.((((.(((....(((((...((((((.((((....((((.((......))..))))....))))...)))))).))))).....)))))))))))))))).)))..))))))))))))).))))))..))).))))).)))))).

Structure

gc      cu     -   ua      -         g    uu   -         U    U   -CGcc     uuu      --a    auau    -u  uu 
  aggaag  ggagg ccu  caugaa gaaaagagc uugu  ggU AGCCAAGGA GACU GCC     uccga   caugaa   gaau    ggca  ua  u
  ||||||  ||||| |||  |||||| ||||||||| ||||  ||| ||||||||| |||| |||     |||||   ||||||   ||||    ||||  ||   
  uucuuc  ccucc gga  guacuu cuuuucucg gaca  CUA UCGGUUCCU CUGA CGG     agguu   guacuu   uuua    cugu  gu  a
-c      -u     c   uc      u         -    cU   A         -    -   accua     --u      aua    aaau    cu  ua 

Annotation confidence Medium

Genome context

MDC013464.188: 2524-2723 [+]

Mature mdm-miR169d-5p

• Accession: MIMAT0025937
• Description: Malus domestica mdm-miR169d-5p mature miRNA
• Sequence: 45 - UAGCCAAGGAUGACUUGCCCG - 65
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR169d-3p

• Accession: MIMAT0056631
• Description: Malus domestica mdm-miR169d-3p mature miRNA
• Sequence: 140 - GGCAGUCUCCUUGGCUAAUCU - 160
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47