Stem-loop mdm-MIR171b

Accession

MI0023043

Description

Malus domestica mdm-MIR171b precursor miRNA

Literature search

9 open access papers mention mdm-MIR171b
(40 sentences)

Sequence

36716 reads, 1850.0 reads per million, 28 experiments

aagaagguauugacgcgcCUCAAUUUGAACGCGUGGCUAauauuggagacuuaaccaugcgauucugaUUGAGCCGCGUCAAUAUCUCCucuu
.((.(((((((((((((.(((((((.((((((((((.(((..........))).))))))).))).))))))).))))))))))))).))...

Structure

--a  a             c       U   -       C   uauu 
   ag agguauugacgcg CUCAAUU GAA CGCGUGG UAa    g
   || ||||||||||||| ||||||| ||| ||||||| |||     
   uC UCUAUAACUGCGC GAGUUag cuu gcguacc auu    g
uuc  C             C       u   a       a   caga 

Annotation confidence Low

Genome context

MDC000665.236: 903-995 [+]

Mature mdm-miR171b-5p

• Accession: MIMAT0056632
• Description: Malus domestica mdm-miR171b-5p mature miRNA
• Sequence: 19 - CUCAAUUUGAACGCGUGGCUA - 39
• Evidence: experimental ; unknown

Mature mdm-miR171b-3p

• Accession: MIMAT0025939
• Description: Malus domestica mdm-miR171b-3p mature miRNA
• Sequence: 69 - UUGAGCCGCGUCAAUAUCUCC - 89
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47