Stem-loop mdm-MIR171c

Accession

MI0023044

Description

Malus domestica mdm-MIR171c precursor miRNA

Literature search

10 open access papers mention mdm-MIR171c
(44 sentences)

Sequence

154388 reads, 5909.0 reads per million, 31 experiments

uacugugaUGUUGGCCCGGUUCACUCAGAgaagaagacuacuuacugcauuugcauguacguagauacguacguuguucuauggucaccugaaucUGAUUGAGCCGCGCCAAUAUCucagug
(((((.(((((((((.(((((((.(((((..((..(((((......(((.....((((((((....)))))))))))....)))))..))...))))).))))))).))))))))).)))))

Structure

     u         C       C     -ga  aa     cuuacu   uuugc        a 
uacug gaUGUUGGC CGGUUCA UCAGA   ag  gacua      gca     auguacgu g
||||| ||||||||| ||||||| |||||   ||  |||||      |||     ||||||||  
gugac CUAUAACCG GCCGAGU AGUcu   uc  cuggu      ugu     ugcaugca a
     u         C       U     aag  ca     --aucu   -----        u 

Annotation confidence High

Genome context

MDC013694.297: 5292-5413 [+]

Mature mdm-miR171c-5p

• Accession: MIMAT0056633
• Description: Malus domestica mdm-miR171c-5p mature miRNA
• Sequence: 9 - UGUUGGCCCGGUUCACUCAGA - 29
• Evidence: experimental ; unknown

Mature mdm-miR171c-3p

• Accession: MIMAT0025940
• Description: Malus domestica mdm-miR171c-3p mature miRNA
• Sequence: 96 - UGAUUGAGCCGCGCCAAUAUC - 116
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47