Stem-loop mdm-MIR171f

Accession

MI0023047

Description

Malus domestica mdm-MIR171f precursor miRNA

Literature search

9 open access papers mention mdm-MIR171f
(40 sentences)

Sequence

caguuugaacgGGAUAUUGGUCCGGUUCAAUAagaaaacagugcucuaaaagugcuugagcucugcuuuuugaUUGAGCCGUGCCAAUAUCACGugccacug
((((....(((.(((((((((.(((((((((.(((((.(((.((((...........)))).))).))))).))))))))).))))))))).)))...))))

Structure

    uuga   G         C         A     a   u    uaaa 
cagu    acg GAUAUUGGU CGGUUCAAU agaaa cag gcuc    a
||||    ||| ||||||||| ||||||||| ||||| ||| ||||    g
guca    uGC CUAUAACCG GCCGAGUUa uuuuu guc cgag    u
    -ccg   A         U         g     c   u    uucg 

Annotation confidence Not enough data

Genome context

MDC008930.262: 37773-37874 [-]

Mature mdm-miR171f-3p

• Accession: MIMAT0025943
• Description: Malus domestica mdm-miR171f-3p mature miRNA
• Sequence: 74 - UUGAGCCGUGCCAAUAUCACG - 94
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR171f-5p

• Accession: MIMAT0037467
• Description: Malus domestica mdm-miR171f-5p mature miRNA
• Sequence: 12 - GGAUAUUGGUCCGGUUCAAUA - 32
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47


2. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812