Stem-loop mdm-MIR171j

Accession

MI0023051

Description

Malus domestica mdm-MIR171j precursor miRNA

Literature search

9 open access papers mention mdm-MIR171j
(40 sentences)

Sequence

2395 reads, 132.0 reads per million, 26 experiments

agCGAUGUUGGUGAGGUUCAAUCcgaagacagauuugcacauycccgcccgcguaaauugaucucagaUUGAGCCGCGCCAAUAUCACU
((.((((((((((.(((((((((.((.((..(((((((.(..........).)))))))..)))).))))))))).)))))))))).))

Structure

  C          A         c  a  ca       a auyc 
ag GAUGUUGGUG GGUUCAAUC ga ga  gauuugc c    c
|| |||||||||| ||||||||| || ||  ||||||| |     
UC CUAUAACCGC CCGAGUUag cu cu  uuaaaug g    c
  A          G         a  -  ag       c cccg 

Annotation confidence High

Genome context

MDC023274.72: 10076-10164 [+]

Mature mdm-miR171j-5p

• Accession: MIMAT0056636
• Description: Malus domestica mdm-miR171j-5p mature miRNA
• Sequence: 3 - CGAUGUUGGUGAGGUUCAAUC - 23
• Evidence: experimental ; unknown

Mature mdm-miR171j-3p

• Accession: MIMAT0025947
• Description: Malus domestica mdm-miR171j-3p mature miRNA
• Sequence: 69 - UUGAGCCGCGCCAAUAUCACU - 89
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47