Stem-loop mdm-MIR171n

Accession

MI0023055

Description

Malus domestica mdm-MIR171n precursor miRNA

Literature search

9 open access papers mention mdm-MIR171n
(40 sentences)

Sequence

1986 reads, 208.0 reads per million, 32 experiments

ugGGAUGUUGGUAUGGUUCAAUCaaauaaaaucucucaaaauuuggguccuuuaauuugaUUGAGCCGUGCCAAUAUCACA
...((((((((((((((((((((((((.(((...(((((...)))))...))).))))))))))))))))))))))))...

Structure

ugG                        a   ucu     a 
   GAUGUUGGUAUGGUUCAAUCaaau aaa   cucaa  
   |||||||||||||||||||||||| |||   ||||| a
   CUAUAACCGUGCCGAGUUaguuua uuu   ggguu  
ACA                        a   ccu     u 

Annotation confidence High

Genome context

Unknown

Mature mdm-miR171n-5p

• Accession: MIMAT0056639
• Description: Malus domestica mdm-miR171n-5p mature miRNA
• Sequence: 3 - GGAUGUUGGUAUGGUUCAAUC - 23
• Evidence: experimental ; unknown

Mature mdm-miR171n-3p

• Accession: MIMAT0025951
• Description: Malus domestica mdm-miR171n-3p mature miRNA
• Sequence: 61 - UUGAGCCGUGCCAAUAUCACA - 81
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47