Stem-loop mdm-MIR172b

Accession

MI0023057

Description

Malus domestica mdm-MIR172b precursor miRNA

Literature search

14 open access papers mention mdm-MIR172b
(76 sentences)

Sequence

agucacuuuuugcggguggagcaucuucaagauucacaaucuuauuugggcuccaauuuuagccccauuugaugauaugAGAAUCUUGAUGAUGCUGCAgcggcaauaaaugacu
(((((.((.((((.(.((.((((((.(((((((((.((((((((..((((((........)).))))..))).))).)).))))))))).)))))).)).).)))).)).)))))

Structure

     c  u    g g  g      u         a  -   -   uu    -  cca 
aguca uu uugc g ug agcauc ucaagauuc ca auc uua  uggg cu   a
||||| || |||| | || |||||| ||||||||| || ||| |||  |||| ||    
ucagu aa aacg c AC UCGUAG AGUUCUAAG gu uag agu  accc ga   u
     a  u    g g  G      U         A  a   u   uu    c  uuu 

Annotation confidence Not enough data

Genome context

MDC001582.391: 7037-7151 [-]

Mature mdm-miR172b

• Accession: MIMAT0025953
• Description: Malus domestica mdm-miR172b mature miRNA
• Sequence: 80 - AGAAUCUUGAUGAUGCUGCA - 99
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47