Stem-loop mdm-MIR172c

Accession

MI0023058

Description

Malus domestica mdm-MIR172c precursor miRNA

Literature search

15 open access papers mention mdm-MIR172c
(78 sentences)

Sequence

5542 reads, 672.0 reads per million, 32 experiments

ggucacuuuuugcggguGGAGCAUCAUCAAGAUUCACAaucuuacuuggguucuaguuuuaaccccauuugaugauaugAGAAUCUUGAUGAUGCUGCAgcagcaauaaaugacu
(((((.((.((((.(.((.((((((((((((((((.((((((((..((((.............))))..))).))).)).)))))))))))))))).)).).)))).)).)))))

Structure

     c  u    g g  G                A  -   -   cu    uucua 
gguca uu uugc g uG AGCAUCAUCAAGAUUC CA auc uua  uggg     g
||||| || |||| | || |||||||||||||||| || ||| |||  ||||     u
ucagu aa aacg c AC UCGUAGUAGUUCUAAG gu uag agu  accc     u
     a  u    a g  G                A  a   u   uu    caauu 

Annotation confidence High

Genome context

MDC029091.9: 7611-7725 [-]

Mature mdm-miR172c-5p

• Accession: MIMAT0056640
• Description: Malus domestica mdm-miR172c-5p mature miRNA
• Sequence: 18 - GGAGCAUCAUCAAGAUUCACA - 38
• Evidence: experimental ; unknown

Mature mdm-miR172c-3p

• Accession: MIMAT0025954
• Description: Malus domestica mdm-miR172c-3p mature miRNA
• Sequence: 80 - AGAAUCUUGAUGAUGCUGCA - 99
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47