Stem-loop mdm-MIR172e

Accession

MI0023060

Description

Malus domestica mdm-MIR172e precursor miRNA

Gene family

MIPF0000035; MIR172

Literature search

14 open access papers mention mdm-MIR172e
(77 sentences)

Sequence

agucauuguuugcgggugccgcaucaccaagauucuuaagugaguagugugacaugauuuaauugauuuaguuaugccgaucggcucacggaguugAGAAUCUUGAUGAUGCUGCAUcagcgauggaugacu
(((((((..((((.(((((.((((((.((((((((((((((((((....((.(((((((..........))))))).))....))))))....)))))))))))).)))))).))))).))))..)))))))

Structure

       gu    g     c      c            ----      agug  a       uaau 
agucauu  uugc ggugc gcauca caagauucuuaa    gugagu    ug caugauu    u
|||||||  |||| ||||| |||||| ||||||||||||    ||||||    || |||||||     
ucaguag  agcg cUACG CGUAGU GUUCUAAGAguu    cacucg    gc guauuga    g
       gu    a     U      A            gagg      gcua  c       uuua 

Annotation confidence Not enough data

Genome context

MDC030881.6: 7973-8104 [+]

Mature mdm-miR172e

• Accession: MIMAT0025956
• Description: Malus domestica mdm-miR172e mature miRNA
• Sequence: 97 - AGAAUCUUGAUGAUGCUGCAU - 117
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47