Stem-loop mdm-MIR172l

Accession

MI0023067

Description

Malus domestica mdm-MIR172l precursor miRNA

Literature search

14 open access papers mention mdm-MIR172l
(75 sentences)

Sequence

1082 reads, 147.0 reads per million, 32 experiments

agucaguauucgcggguGCAGCAUCAUCAAGAUUCACauaccuuagcaagggggcuaccuuuagcgaucgaguaaauugguaccacaccaauaugaauauuccuucaacuuccuuuuguacuugaaagguaguuycuucgaagugGGAAUCUUGAUGAUGCUGCAGcagcugguacaugacu
((((((((((.((.(.(((((((((((((((((((.(((......((.(((((....))))).))((..(((((.((((((.....)))))).....)))))..))((((.(((((((....))))))).))))........))).))))))))))))))))))).).)).))))).)))))

Structure

     -     c  g g                   A   ----------accuuagcaagggggcuaccuuuagc  uc     ----a      a 
aguca guauu gc g uGCAGCAUCAUCAAGAUUC Cau                                    ga  gagua     auuggu c
||||| ||||| || | ||||||||||||||||||| |||                                    ||  |||||     |||||| c
ucagu caugg cg c ACGUCGUAGUAGUUCUAAG gug                                    cu  cuuau     uaacca a
     a     u  a G                   G   aagcuucyuugauggaaaguucauguuuuccuucaa  uc     aagua      c 

Annotation confidence High

Genome context

MDC017644.159: 13803-13984 [+]

Mature mdm-miR172l-5p

• Accession: MIMAT0056649
• Description: Malus domestica mdm-miR172l-5p mature miRNA
• Sequence: 18 - GCAGCAUCAUCAAGAUUCAC - 37
• Evidence: experimental ; unknown

Mature mdm-miR172l-3p

• Accession: MIMAT0025963
• Description: Malus domestica mdm-miR172l-3p mature miRNA
• Sequence: 146 - GGAAUCUUGAUGAUGCUGCAG - 166
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47