Stem-loop mdm-MIR172l

Accession

MI0023067

Description

Malus domestica mdm-MIR172l precursor miRNA

Gene family

MIPF0000035; MIR172

Literature search

14 open access papers mention mdm-MIR172l
(77 sentences)

Sequence

agucaguauucgcgggugcagcaucaucaagauucacauaccuuagcaagggggcuaccuuuagcgaucgaguaaauugguaccacaccaauaugaauauuccuucaacuuccuuuuguacuugaaagguaguuycuucgaagugGGAAUCUUGAUGAUGCUGCAGcagcugguacaugacu
((((((((((.((.(.(((((((((((((((((((.(((......((.(((((....))))).))((..(((((.((((((.....)))))).....)))))..))((((.(((((((....))))))).))))........))).))))))))))))))))))).).)).))))).)))))

Structure

     -     c  g g                   a   ----------accuuagcaagggggcuaccuuuagc  uc     ----a      a 
aguca guauu gc g ugcagcaucaucaagauuc cau                                    ga  gagua     auuggu c
||||| ||||| || | ||||||||||||||||||| |||                                    ||  |||||     |||||| c
ucagu caugg cg c ACGUCGUAGUAGUUCUAAG gug                                    cu  cuuau     uaacca a
     a     u  a G                   G   aagcuucyuugauggaaaguucauguuuuccuucaa  uc     aagua      c 

Annotation confidence Not enough data

Genome context

MDC017644.159: 13803-13984 [+]

Mature mdm-miR172l

• Accession: MIMAT0025963
• Description: Malus domestica mdm-miR172l mature miRNA
• Sequence: 146 - GGAAUCUUGAUGAUGCUGCAG - 166
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47