Stem-loop mdm-MIR390e

Accession

MI0023077

Description

Malus domestica mdm-MIR390e precursor miRNA

Literature search

5 open access papers mention mdm-MIR390e
(39 sentences)

Sequence

33383 reads, 8396.0 reads per million, 32 experiments

aguguggaagaaucuguuAAGCUCAGGAGGGAUAGCGCCauucucgguuugguuuaaccacguaucgCGCUAUCCAUCUUGGGCUUCAUGGcuucuucuuacu
((((.(((((((.((((.((((((((((.(((((((((.((....((((......))))....)).))))))))).)))))))))).)))).)))))))))))

Structure

    u       u    u          G         C  ucuc    ug 
agug ggaagaa cugu AAGCUCAGGA GGAUAGCGC au    gguu  g
|||| ||||||| |||| |||||||||| ||||||||| ||    ||||   
ucau ucuucuu GGUA UUCGGGUUCU CCUAUCGCg ua    ccaa  u
    -       c    C          A         c  ugca    uu 

Annotation confidence Medium

Genome context

MDC000913.252: 3959-4061 [+]

Mature mdm-miR390e-5p

• Accession: MIMAT0025973
• Description: Malus domestica mdm-miR390e-5p mature miRNA
• Sequence: 19 - AAGCUCAGGAGGGAUAGCGCC - 39
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR390e-3p

• Accession: MIMAT0056655
• Description: Malus domestica mdm-miR390e-3p mature miRNA
• Sequence: 68 - CGCUAUCCAUCUUGGGCUUCAUGG - 91
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47