Stem-loop mdm-MIR393a

Accession

MI0023079

Description

Malus domestica mdm-MIR393a precursor miRNA

Literature search

7 open access papers mention mdm-MIR393a
(32 sentences)

Sequence

90735 reads, 5591.0 reads per million, 32 experiments

guggaggcuUCCAAAGGGAUCGCAUUGAUCUaauugaucauauaugucaaacaucguccguacagacauggcagguuauauauguaguuggAUCAUGCGAUCCCUUCGGACGUuuccau
((((((((.(((.((((((((((((.((((((((((..((((((((.....(((.(((......))))))......)))))))))))))))))))))))))))))).))).))))))))

Structure

        u   A            U          au        -ucaaa   c   cg 
guggaggc UCC AAGGGAUCGCAU GAUCUaauug  cauauaug      cau guc  u
|||||||| ||| |||||||||||| ||||||||||  ||||||||      ||| |||   
uaccuuUG AGG UUCCCUAGCGUA CUAgguugau  guauauau      gua cag  a
        C   C            -          --        uggacg   -   ac 

Annotation confidence High

Genome context

MDC019461.80: 14961-15079 [+]

Mature mdm-miR393a-5p

• Accession: MIMAT0025975
• Description: Malus domestica mdm-miR393a-5p mature miRNA
• Sequence: 10 - UCCAAAGGGAUCGCAUUGAUCU - 31
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR393a-3p

• Accession: MIMAT0056657
• Description: Malus domestica mdm-miR393a-3p mature miRNA
• Sequence: 92 - AUCAUGCGAUCCCUUCGGACGU - 113
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47