Stem-loop mdm-MIR393c

Accession

MI0023081

Description

Malus domestica mdm-MIR393c precursor miRNA

Literature search

6 open access papers mention mdm-MIR393c
(31 sentences)

Sequence

90788 reads, 5591.0 reads per million, 32 experiments

gguggaggcuUCCAAAGGGAUCGCAUUGAUCUaauugaucagauaugucaaacaucauccgcauagacauaugguggguuauguuuucgucuguguagucggAUCAUGCGAUCCCUUCGGACGUuuccauc
(((((((((.(((.((((((((((((.(((((.((((..(((((.....((((((.(((((((((....))).)))))).))))))..)))))..)))).))))))))))))))))).))).)))))))))

Structure

         u   A            U     a    au     auguc      c      -   g 
gguggaggc UCC AAGGGAUCGCAU GAUCU auug  cagau     aaacau auccgc aua a
||||||||| ||| |||||||||||| ||||| ||||  |||||     |||||| |||||| |||  
cuaccuuUG AGG UUCCCUAGCGUA CUAgg ugau  gucug     uuugua ugggug uau c
         C   C            -     c    gu     ---cu      u      g   a 

Annotation confidence High

Genome context

MDC005391.195: 248-378 [+]

Mature mdm-miR393c-5p

• Accession: MIMAT0025977
• Description: Malus domestica mdm-miR393c-5p mature miRNA
• Sequence: 11 - UCCAAAGGGAUCGCAUUGAUCU - 32
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR393c-3p

• Accession: MIMAT0056659
• Description: Malus domestica mdm-miR393c-3p mature miRNA
• Sequence: 103 - AUCAUGCGAUCCCUUCGGACGU - 124
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47