Stem-loop mdm-MIR395b

Accession

MI0023085

Description

Malus domestica mdm-MIR395b precursor miRNA

Literature search

5 open access papers mention mdm-MIR395b
(50 sentences)

Sequence

78454 reads, 3249.0 reads per million, 30 experiments

aucagcuguccccuggaGUUUCCCUGACCACUUCAUUGggaugaaucauccmaaaacccuuccacugaaggugaaauuccaugcagcaugcaugcaucgcaCUGAAGUGUUUGGGGGAACUCcgguuggcaucugau
(((((.((((..(((((((((((((((.(((((((.((.((((..............(((((....)))))........((((((...)))))))))).)).))))))).)))))))))))))))..)))).)))))

Structure

     c    cc               C       U  g    aaucauccmaaaacccuuccacugaaggugaaauuc      g 
aucag uguc  cuggaGUUUCCCUGA CACUUCA UG gaug                                    caugca  
||||| ||||  ||||||||||||||| ||||||| || ||||                                    |||||| c
uaguc acgg  ggcCUCAAGGGGGUU GUGAAGU ac cuac                                    guacgu  
     u    uu               U       C  g    ------------------------------------      a 

Annotation confidence High

Genome context

MDC003846.250: 18712-18848 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from mdm-MIR395b

Mature mdm-miR395b-5p

• Accession: MIMAT0056663
• Description: Malus domestica mdm-miR395b-5p mature miRNA
• Sequence: 18 - GUUUCCCUGACCACUUCAUUG - 38
• Evidence: experimental ; unknown

Mature mdm-miR395b-3p

• Accession: MIMAT0025981
• Description: Malus domestica mdm-miR395b-3p mature miRNA
• Sequence: 102 - CUGAAGUGUUUGGGGGAACUC - 122
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47