Stem-loop mdm-MIR395e

Accession

MI0023088

Description

Malus domestica mdm-MIR395e precursor miRNA

Literature search

5 open access papers mention mdm-MIR395e
(50 sentences)

Sequence

90422 reads, 3505.0 reads per million, 32 experiments

gaaucagguguccccuagaGUUCCCCCGAACACUUCAUUaagaucgaugcauaaguucuuuguauauuaaaugaugauugcaccaucucuaCUGAAGUGUUUGGGGGAACUCcgggugucauuugauc
..((((((((.((((..((((((((((((((((((((.((((((.(.((((...(((.((((.....)))).)))...))))).)))).)).)))))))))))))))))))).))).).)))))))).

Structure

ga        u -   ua                    U  -    c a    uaa   c    u 
  aucaggug c ccc  gaGUUCCCCCGAACACUUCA Ua agau g ugca   guu uuug a
  |||||||| | |||  |||||||||||||||||||| || |||| | ||||   ||| |||| u
  uaguuuac g ggg  CUCAAGGGGGUUUGUGAAGU au ucua c acgu   uag aaau a
-c        u u   -c                    C  c    c -    uag   u    u 

Annotation confidence High

Genome context

MDC003846.250: 1344-1471 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdm-MIR395e

Mature mdm-miR395e-5p

• Accession: MIMAT0056665
• Description: Malus domestica mdm-miR395e-5p mature miRNA
• Sequence: 20 - GUUCCCCCGAACACUUCAUU - 39
• Evidence: experimental ; unknown

Mature mdm-miR395e-3p

• Accession: MIMAT0025984
• Description: Malus domestica mdm-miR395e-3p mature miRNA
• Sequence: 92 - CUGAAGUGUUUGGGGGAACUC - 112
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47