miRBase entry: mdm-MIR395i

Stem-loop mdm-MIR395i


Accession
MI0023092
Description
Malus domestica mdm-MIR395i precursor miRNA

Literature search
5 open access papers mention mdm-MIR395i
(49 sentences)

Sequence

ucaggugucaccaagaGUUCCCUUGACCACUUCAUUGggaaauagucucuuuugcaacuaaauauccuaCUGAAGUGUUUGGGGGAACUCccggcggcauuuga
(((((((((.((..((((((((((((.(((((((.(((((..((((..(....)..))))....))))).))))))).))))))))))))..)).)))))))))

Structure
         a  aa            C       U     --aa    cu u 
ucagguguc cc  gaGUUCCCUUGA CACUUCA UGgga    uagu  c u
||||||||| ||  |||||||||||| ||||||| |||||    ||||  |  
aguuuacgg gg  CUCAAGGGGGUU GUGAAGU auccu    auca  g u
         c  cc            U       C     auaa    ac u 


Annotation confidence Not enough data
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Genome context
MDC003768.152: 37677-37780 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mdm-MIR395i
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdm-miR395i-3p

Accession MIMAT0025988
Description Malus domestica mdm-miR395i-3p mature miRNA
Sequence 70 - CUGAAGUGUUUGGGGGAACUC - 90
Evidence experimental
miRNAseq [1]

Mature mdm-miR395i-5p

Accession MIMAT0037471
Description Malus domestica mdm-miR395i-5p mature miRNA
Sequence 17 - GUUCCCUUGACCACUUCAUUG - 37
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47

  2. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812