Stem-loop mdm-MIR396c

Accession

MI0023095

Description

Malus domestica mdm-MIR396c precursor miRNA

Literature search

8 open access papers mention mdm-MIR396c
(37 sentences)

Sequence

480587 reads, 35632.0 reads per million, 32 experiments

uugccaugcuuUUCCACAGCUUUCUUGAACUUcaauucucugcugucuaaaumucuuucaggacuagcaccauggaaGCUCAAGAAAGCUGUGGGAGAccauggcaa
.(((((((.(((((((((((((((((((.((((.......((((((((............)))).)))).....)))).))))))))))))))))))).))))))).

Structure

u       c                   A    aauucuc    -    aaaum 
 ugccaug uuUUCCACAGCUUUCUUGA CUUc       ugcu gucu     u
 ||||||| ||||||||||||||||||| ||||       |||| ||||      
 acgguac AGAGGGUGUCGAAAGAACU Gaag       acga cagg     c
a       c                   C    --guacc    u    acuuu 

Annotation confidence High

Genome context

MDC003523.387: 23887-23993 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdm-MIR396c

Mature mdm-miR396c-5p

• Accession: MIMAT0025991
• Description: Malus domestica mdm-miR396c-5p mature miRNA
• Sequence: 12 - UUCCACAGCUUUCUUGAACUU - 32
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR396c-3p

• Accession: MIMAT0056669
• Description: Malus domestica mdm-miR396c-3p mature miRNA
• Sequence: 78 - GCUCAAGAAAGCUGUGGGAGA - 98
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47