Stem-loop mdm-MIR396g

Accession

MI0023099

Description

Malus domestica mdm-MIR396g precursor miRNA

Literature search

8 open access papers mention mdm-MIR396g
(37 sentences)

Sequence

460798 reads, 21136.0 reads per million, 31 experiments

gauccuccuugrgauuUUCCACGGCUUUCUUGAACUGugcagugugcagaagaguuaaacuggcagaaauuuuucaugcaguuacauaaacagUUCAAGAAAGCUGUGAAAAAccacaggcaggauu
((((((.((((.(.((((.(((((((((((((((((((...(((((((((((((((...........)))))))).))))..)))....))))))))))))))))))).)))).).)))).))))))

Structure

      c    r a    C                   -gca   --    -        aaac 
gauccu cuug g uuUU CACGGCUUUCUUGAACUGu    gug  ugca gaagaguu    u
|||||| |||| | |||| |||||||||||||||||||    |||  |||| ||||||||    g
uuagga ggac c AAAA GUGUCGAAAGAACUUgaca    cau  acgu cuuuuuaa    g
      c    a c    A                   aaua   ug    a        agac 

Annotation confidence High

Genome context

Unknown

Mature mdm-miR396g-5p

• Accession: MIMAT0025995
• Description: Malus domestica mdm-miR396g-5p mature miRNA
• Sequence: 17 - UUCCACGGCUUUCUUGAACUG - 37
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR396g-3p

• Accession: MIMAT0056673
• Description: Malus domestica mdm-miR396g-3p mature miRNA
• Sequence: 94 - UUCAAGAAAGCUGUGAAAAA - 113
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47