Stem-loop mdm-MIR397a

Accession

MI0023100

Description

Malus domestica mdm-MIR397a precursor miRNA

Literature search

3 open access papers mention mdm-MIR397a
(10 sentences)

Sequence

144316 reads, 4972.0 reads per million, 31 experiments

agaaacaucaUUGAGUGCAGCGUUGAUGAAAguccguauuccuuwcgaaucuucauuaggcaucggaaacUUUCGUCAGCUGUGCACCCAAUuauguuucu
((((((((.((((.(((((..(((((((((((((((.((.(((...((....))...))).))))))..)))))))))))..))))).)))).))))))))

Structure

        c    A     GC           --    u  u   uwc  a 
agaaacau aUUG GUGCA  GUUGAUGAAAg  uccg au ccu   ga u
|||||||| |||| |||||  |||||||||||  |||| || |||   ||  
ucuuugua UAAC CACGU  CGACUGCUUUc  aggc ua gga   cu c
        u    C     GU           aa    -  c   uua  u 

Annotation confidence Medium

Genome context

MDC000805.395: 32063-32163 [-]

Mature mdm-miR397a-5p

• Accession: MIMAT0025996
• Description: Malus domestica mdm-miR397a-5p mature miRNA
• Sequence: 11 - UUGAGUGCAGCGUUGAUGAAA - 31
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR397a-3p

• Accession: MIMAT0056674
• Description: Malus domestica mdm-miR397a-3p mature miRNA
• Sequence: 71 - UUUCGUCAGCUGUGCACCCAAU - 92
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47