Stem-loop mdm-MIR398a

Accession

MI0023102

Description

Malus domestica mdm-MIR398a precursor miRNA

Literature search

5 open access papers mention mdm-MIR398a
(33 sentences)

Sequence

21387 reads, 1026.0 reads per million, 32 experiments

guucauauagcarauggucacccCAAAGGUGUGAAACUGAGAACAcaaaugguguugycygcgacaaacauuguaagcacugcuuacgcauuuUGUGUUCUCAGGUCACCCCUUuggggcaccuugcuuacaugcac
((......((((...(((..(((((((((.((((..(((((((((((((..((((((....)))).......((((((...))))))))..))))))))))))).)))).))))))))).))).)))).....))..

Structure

--  ucauau    rau   ca         U    AA             ug  guugycygcgacaaacauu      a 
  gu      agca   ggu  cccCAAAGG GUGA  CUGAGAACAcaaa  gu                   guaagc  
  ||      ||||   |||  ||||||||| ||||  |||||||||||||  ||                   |||||| c
  cg      ucgu   cca  gggguUUCC CACU  GACUCUUGUGUuu  cg                   cauucg  
ca  -uacau    --u   -c         C    -G             ua  -------------------      u 

Annotation confidence Medium

Genome context

MDC009194.120: 3529-3665 [+]

Mature mdm-miR398a-5p

• Accession: MIMAT0056676
• Description: Malus domestica mdm-miR398a-5p mature miRNA
• Sequence: 24 - CAAAGGUGUGAAACUGAGAACA - 45
• Evidence: experimental ; unknown

Mature mdm-miR398a-3p

• Accession: MIMAT0025998
• Description: Malus domestica mdm-miR398a-3p mature miRNA
• Sequence: 94 - UGUGUUCUCAGGUCACCCCUU - 114
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47