Stem-loop mdm-MIR398b

Accession

MI0023103

Description

Malus domestica mdm-MIR398b precursor miRNA

Literature search

5 open access papers mention mdm-MIR398b
(36 sentences)

Sequence

726219 reads, 26133.0 reads per million, 29 experiments

gguagagggguuccacaGGAGUGACCUGAGAUCACAUGUagcauuuauguauugcgcuugaUGUGUUCUCAGGUCGCCCCUGcgguaccuucucuacc
(((((((((((.((.((((.(((((((((((.(((((..(((.............)))..))))).))))))))))).)))).)).))).))))))))

Structure

        -   u  a    A           U     GU   auuua 
gguagagg ggu cc caGG GUGACCUGAGA CACAU  agc     u
|||||||| ||| || |||| ||||||||||| |||||  |||     g
ccaucucu cca gg GUCC CGCUGGACUCU GUGUa  ucg     u
        u   u  c    C           U     gu   cguua 

Annotation confidence High

Genome context

MDC014136.296: 3441-3538 [-]

Mature mdm-miR398b-5p

• Accession: MIMAT0056677
• Description: Malus domestica mdm-miR398b-5p mature miRNA
• Sequence: 18 - GGAGUGACCUGAGAUCACAUGU - 39
• Evidence: experimental ; unknown

Mature mdm-miR398b-3p

• Accession: MIMAT0025999
• Description: Malus domestica mdm-miR398b-3p mature miRNA
• Sequence: 62 - UGUGUUCUCAGGUCGCCCCUG - 82
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47