Stem-loop mdm-MIR399d

Accession

MI0023108

Description

Malus domestica mdm-MIR399d precursor miRNA

Literature search

7 open access papers mention mdm-MIR399d
(10 sentences)

Sequence

6184 reads, 498.0 reads per million, 30 experiments

ugagcgaauuaguuguaGGGCUUCUCUCCGAUGGCAGGaaauauuaauggucaugaaucauggaagcauggauuuuuguguucucucaugaguuaugaccUGCCAAAGGAGAGUUGCCCUAcgacugcuuuugcuua
((((((((.((((((((((((..((((((..(((((............((((((((.((((((((((((((....))))))).)).))))).)))))))))))))..))))))..))))))))))))..))))))))

Structure

        -u            UU      GA     GGaaauauuaau        a     -  -       a 
ugagcgaa  uaguuguaGGGC  CUCUCC  UGGCA            ggucauga ucaug ga agcaugg u
||||||||  ||||||||||||  ||||||  |||||            |||||||| ||||| || |||||||  
auucguuu  gucagcAUCCCG  GAGAGG  ACCGU            ccaguauu aguac cu uuguguu u
        uc            UU      AA     ------------        g     u  c       u 

Annotation confidence High

Genome context

MDC001546.348: 8228-8364 [-]

Mature mdm-miR399d-5p

• Accession: MIMAT0056681
• Description: Malus domestica mdm-miR399d-5p mature miRNA
• Sequence: 18 - GGGCUUCUCUCCGAUGGCAGG - 38
• Evidence: experimental ; unknown

Mature mdm-miR399d-3p

• Accession: MIMAT0026004
• Description: Malus domestica mdm-miR399d-3p mature miRNA
• Sequence: 101 - UGCCAAAGGAGAGUUGCCCUA - 121
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47