Stem-loop mdm-MIR399e

Accession

MI0023109

Description

Malus domestica mdm-MIR399e precursor miRNA

Literature search

7 open access papers mention mdm-MIR399e
(9 sentences)

Sequence

2171 reads, 192.0 reads per million, 29 experiments

caGGGCAAAGUCUCUUCUGGCAUGUagccacuuacaaauuacaaauucuuaauucuggcugagcaagcuggccagccuugcauuacuuuuguagugugcuuuaUGCCAAAGGAGAUUUGCUCGG
..(((((((.((((((.(((((((.(((((((.(((((...........((((.(.(((((.((......)))))))..).))))..))))))))).))).))))))).)))))))))))))..

Structure

ca       G      C       U   -    u     uuacaaauucu    u -u     a  aa 
  GGGCAAA UCUCUU UGGCAUG agc cacu acaaa           uaau c  ggcug gc  g
  ||||||| |||||| ||||||| ||| |||| |||||           |||| |  ||||| ||   
  CUCGUUU AGAGGA ACCGUau ucg guga uguuu           auua g  ccgac cg  c
GG       -      A       u   u    -     ---------uc    c uu     -  gu 

Annotation confidence High

Genome context

MDC009537.404: 16273-16396 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdm-MIR399e

Mature mdm-miR399e-5p

• Accession: MIMAT0056682
• Description: Malus domestica mdm-miR399e-5p mature miRNA
• Sequence: 3 - GGGCAAAGUCUCUUCUGGCAUGU - 25
• Evidence: experimental ; unknown

Mature mdm-miR399e-3p

• Accession: MIMAT0026005
• Description: Malus domestica mdm-miR399e-3p mature miRNA
• Sequence: 104 - UGCCAAAGGAGAUUUGCUCGG - 124
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47