Stem-loop mdm-MIR399h

Accession

MI0023112

Description

Malus domestica mdm-MIR399h precursor miRNA

Literature search

6 open access papers mention mdm-MIR399h
(8 sentences)

Sequence

1094 reads, 149.0 reads per million, 29 experiments

caGAGCAAAGUCUCCUCUGGCAUGUagccacuuacaauuacaaaugcuuaauucuggcugaacaagcuggccagccuugcauuauuuuuguagugugcuuuaUGCCAAAGGAGAUUUGCUCGG
..(((((((.((((((.(((((((.(((((((.((((.....(((((......(((((((.......)))))))....)))))....)))))))).))).))))))).)))))))))))))..

Structure

ca       G      C       U   -    u    uuaca     uuaauu       aa 
  GAGCAAA UCUCCU UGGCAUG agc cacu acaa     aaugc      cuggcug  c
  ||||||| |||||| ||||||| ||| |||| ||||     |||||      |||||||  a
  CUCGUUU AGAGGA ACCGUau ucg guga uguu     uuacg      gaccggu  a
GG       -      A       u   u    -    -uuua     --uucc       cg 

Annotation confidence High

Genome context

MDC021118.72: 3807-3929 [-]

Mature mdm-miR399h-5p

• Accession: MIMAT0056685
• Description: Malus domestica mdm-miR399h-5p mature miRNA
• Sequence: 3 - GAGCAAAGUCUCCUCUGGCAUGU - 25
• Evidence: experimental ; unknown

Mature mdm-miR399h-3p

• Accession: MIMAT0026008
• Description: Malus domestica mdm-miR399h-3p mature miRNA
• Sequence: 103 - UGCCAAAGGAGAUUUGCUCGG - 123
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47